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ViBRANT is funded by the European Union 7th Framework Programme within the Research Infrastructures group.
Contract no. RI-261532. Period, Dec. 2010 to Nov. 2013. Coordinator: Dr Vince Smith. E-mail: enquiries@vbrant.eu
Biblio
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"From XML to XML: The Why and How of Making the Biodiversity Literature Accessible to Researchers." In Proceedings of the Seventh conference on International Language Resources and Evaluation (LREC'10), edited by Nicoletta(Conference Chair) Calzolari, Khalid Choukri, Bente Maegaard, Joseph Mariani, Jan Odjik, Stelios Piperidis and Mike Rosne. Valletta, Malta: European Language Resources Association (ELRA), 2010. http://www.lrec-conf.org/proceedings/lrec2010/index.html
"Systematics and phylogeography of the genus Palaemonetes (Decapoda: Palaemonidae) in the circum-Mediterranean region." In The Crustacean Society Summer Meeting & Tenth Colloquium Crustacea Decapoda Mediterranean., 2012. Abstract
"Systematics and phylogeography of the genus Palaemonetes (Decapoda: Palaemonidae) in the cirum-Mediterranean region." In The Crustacean Society Summer Meeting & 10th Colloquium Crustacea Decapoda Mediterranea. Royal Olympic Hotel, Athens, 2012.
"The centipede genus Eupolybothrus Verhoeff, 1907 (Chilopoda: Lithobiomorpha: Lithobiidae) in North Africa, a cybertaxonomic revision, with a key to all species in the genus and the first use of DNA barcoding for the group." ZooKeys 50 (2010): 29-77. http://www.pensoft.net/journal_home_page.php?journal_id=1&page=article&type=show&article_id=504&abstract=1
"Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data." Biodiversity Data Journal 1 (2013). http://vbrant.eu/sites/vbrant.eu/files/Stoev_et_al_2013_cyber-centipede.pdf Download: Stoev_et_al_2013_cyber-centipede.pdf (1.33 MB)
"A review of the millipede genus Sinocallipus Zhang, 1993 (Diplopoda: Callipodida: Sinocallipodidae), with notes on gonopods monotony vs. peripheral diversity in millipedes." ZooKeys 90 (2011): 13-34. http://www.pensoft.net/journals/zookeys/article/1291/a-review-of-the-millipede-genus-sinocallipus-zhang-1993-diplopoda-callipodida-sinocallipodidae-with-notes-on-gonopods-mo
"Cybertaxonomy." In The Future of Scholarly Communication, edited by D. Shorley and M. Jubb, 63-74. London: Facet Publishing, 2013.
"Beyond dead trees: integrating the scientific process in the Biodiversity Data Journal." Biodiversity Data Journal 1 (2013). http://vbrant.eu/sites/vbrant.eu/files/Smith_et_al_BDJ_launch_2013_Editorial.pdf Download: Smith_et_al_BDJ_launch_2013_Editorial.pdf (420.29 KB)
"A framework for publishing primary biodiversity data." BMC Bioinformatics 12, no. Suppl 15 (2011): I1. http://www.biomedcentral.com/1471-2105/12/S15/I1
"Review of the sawfly genus Empria (Hymenoptera, Tenthredinidae) in Japan." ZooKeys 150 (2011): 347-380. http://dx.doi.org/10.3897/zookeys.150.1968 Abstract
"XML schemas and mark-up practices of taxonomic literature." ZooKeys 150 (2011): 89-116. http://dx.doi.org/10.3897/zookeys.150.2213 Abstract
"Publishing online identification keys in the form of scholarly papers." ZooKeys 205 (2012): 1-3.
"Literature based species occurrence data of birds of northeast India." {ZooKeys} 150 (2011): 407-417. http://dx.doi.org/10.3897/zookeys.150.2002 Abstract
"Towards mainstreaming of biodiversity data publishing: recommendations of the GBIF Data Publishing Framework Task Group." BMC Bioinformatics 12, no. Suppl 15 (2011): S1. http://www.biomedcentral.com/1471-2105/12/S15/S1 Abstract
"Wikis in scholarly publishing." Information Services and Use 31 (2011): 53-59. http://precedings.nature.com/documents/5891/version/1
"Sustainable Taxonomic Infrastructures: System or Process?" In 8th Critical Management Studies Conference. Manchester, UK, 2013. http://vbrant.eu/sites/vbrant.eu/files/Paper%20Taxonomic%20infrastructures%20Koerten%20and%20van%20den%20Besselaar_0.pdf Download: Paper Taxonomic infrastructures Koerten and van den Besselaar.pdf (709.47 KB)
Document Mark-Up for Different Users and Purposes In Metadata and Semantics Research, Edited by Emmanouel Garoufallou and Jane Greenberg. Vol. 390. Communications in Computer and Information Science 390. Thessaloniki, Greece, 2013. http://dx.doi.org/10.1007/978-3-319-03437-9_34 Abstract
"Towards the bibliography of life." {ZooKeys} 150 (2011): 151-166. http://dx.doi.org/10.3897/zookeys.150.2167 Abstract
Are citations a complete measure for the impact of e-research infrastructures? In 14th International Society of Scientometrics and Informetrics Conference . Juan Gorriaz & Edgar Schiebelet ed. Vol. 1. Proceedings of ISSI 2013 1., 2013. http://vbrant.eu/sites/vbrant.eu/files/issi2013_citations_measure_impact_0.pdf Download: issi2013_citations_measure_impact.pdf (265.6 KB)
"Understanding societal impact through productive interactions: ICT research as a case." Research Evaluation (Submitted). http://vbrant.eu/sites/vbrant.eu/files/20131122%20understanding_societal_impact_ResearchEvaluation.pdf Download: 20131122 understanding_societal_impact_ResearchEvaluation.pdf (795.46 KB)
"Indicators for the Data Usage Index (DUI): an incentive for publishing primary biodiversity data through global information infrastructure." BMC Bioinformatics 12, no. Suppl 15 (2011): S3. http://www.biomedcentral.com/1471-2105/12/S15/S3 Abstract
"A simultaneous journal / wiki publication and dissemination of a new species description: Neobidessodes darwiniensis sp. n. from northern Australia (Coleoptera, Dytiscidae, Bidessini)." ZooKeys 79 (2011): 11-20. http://www.pensoft.net/journals/zookeys/article/803/abstract/a-simultaneous-journal-wiki-publication-and-dissemination-of-a-new-species-description-neobidessodes-darwiniensis-sp-n-f
"Data would help ecosystem models." Nature (2014).
"Horizon 2020: A call to forge biodiversity links." Nature 502 (2013).
"A decadal view of biodiversity informatics: challenges and priorities." BMC ecology 13 (2013): 16. Abstract
"Letter to the editor." Bulletin of the British Ecological Society 44 (2013): 50.
"Data hosting infrastructure for primary biodiversity data." BMC Bioinformatics 12, no. Suppl 15 (2011): S5. http://www.biomedcentral.com/1471-2105/12/S15/S5 Abstract
"ZooKeys 150: Three and a half years of innovative publishing and growth." ZooKeys 150 (2011): 5-14. http://dx.doi.org/10.3897/zookeys.150.2431 Abstract
"Studying the effects of virtual biodiversity research infrastructures." {ZooKeys} 150 (2011): 193-210. http://dx.doi.org/10.3897/zookeys.150.2164 Abstract
"Knowledge Discovery for Biodiversity: from Data Mining to Sign Management." In International Environmental Modelling and Software Society (iEMSs), edited by R. Seppelt, A. A. Voinov, S. Lange and D. Bankamp. 2012 International Congress on Environmental Modelling and Software Managing Resources of a Limited Planet, Sixth Biennial Meeting. Leipzig, Germany, 2012. http://www.iemss.org/society/index.php/iemss-2012-proceedings Abstract
Download: iEMSs2012_Conruyt_et_Al.pdf (1.95 MB); iEMSs2012_Conruyt_oral_present.pdf (27.72 MB)
From Knowledge transmission to Sign sharing: Semiotic Web as a new paradigm for Teaching and Learning in the Future Internet In 20th European Conference on Artificial Intelligence, Edited by Eunika Mercier-Laurent, Nada Matta, Mieczyslow L. Owoc and Inès Saad. Vol. 1st International Workshop on Artificial Intelligence for Knowledge Management, AI4KM'2012. ECAI’2012 1st International Workshop on Artificial Intelligence for Knowledge Management, AI4KM'2012. Montpellier, France, 2012. http://www2.lirmm.fr/ecai2012/images/stories/ecai_doc/pdf/workshop/W22_AI4KM_proceedings.pdf Abstract
Download: AIKM_2012_paper_Conruyt_Al.pdf (9.4 MB)
"Revision of the freshwater genus Atyaephyra (Crustacea, Decapoda, Atyidae) based on morphological and molecular data." Zookeys 229 (2012): 53-110. Abstract
Download: Christodoulou et. al, 2012.pdf (8.2 MB)
"Revision of the freshwater genus Atyaephyra (Crustacea, Decapoda, Atyidae) based on morphological and molecular data." Zookeys 229 (2012): 53-110. http://www.pensoft.net/journal_home_page.php?search=Antonios%20Magoulas&author=&title=&full_text=&supplementary=&OT_DAY=Day&OT_MONTH=&OT_GOD=&TO_DAY=&TO_MONTH=&TO_YEAR=&keywords=&journal_id=1&page=j_search&type=show_results&SESID=&stranica=1&sort=TITLE&so Download: Christodoulou et. al, 2012.pdf (8.2 MB)
"Data Paper: Mechanism to incentivise discovery of biodiversity data resources." BMC Bioinformatics 12(Suppl 15):S2 (2011). http://www.biomedcentral.com/1471-2105/12/S15/S2
A simple drop and compute model for a SaaS cloud infrastructure for advanced research computing: the experiences of building OBOE, the Oxford Batch Operation Engine In CCGrid2014, the 14th IEEE/ACM International Symposium on Cluster, Cloud and Grid Computing, Edited by Esmond G. Ng. Chicago, Illinois, USA: IEEE Computer Science Press; IEEE Digital Library, 2014. Abstract
Download: ccgrid2014_submission_177.pdf (324.96 KB)
"Ikey+: a new single-access key generation web service." Systematic Biology 62, no. 1 (2012): 157-161. http://sysbio.oxfordjournals.org/content/early/2012/08/03/sysbio.sys069.short?rss=1
"Biodiversity information platforms: From standards to interoperability." {ZooKeys} 150 (2011): 71-87. http://dx.doi.org/10.3897/zookeys.150.2166 Abstract
"Linking multiple biodiversity informatics platforms with Darwin Core Archives." Biodiversity Data Journal 2 (2014). http://biodiversitydatajournal.com//articles.php?id=1039 Abstract
"The future of the past in the present: biodiversity informatics and geological time." {ZooKeys} 150 (2011): 397-405. http://dx.doi.org/10.3897/zookeys.150.2350 Abstract
"Open source data logger for low-cost environmental monitoring." Biodiversity Data Journal 2 (2014). http://biodiversitydatajournal.com/articles.php?id=1059 Abstract
"EXIF Custom: Automatic image metadata extraction for Scratchpads and Drupal." Biodiverdity Data Journal 1 (2013). http://biodiversitydatajournal.com/articles.php?id=973
"Data standards, sense and stability: Scratchpads, the {ICZN} and {ZooBank}." {ZooKeys} 150 (2011): 167-176. http://dx.doi.org/10.3897/zookeys.150.2248 Abstract
"Supporting Red List threat assessments with {GeoCAT:} geospatial conservation assessment tool." {ZooKeys} 150 (2011): 117-126. http://dx.doi.org/10.3897/zookeys.150.2109 Abstract
"The Biodiversity Informatics Potential Index." BMC Bioinformatics 12, no. Suppl 15 (2011): S4. http://www.biomedcentral.com/1471-2105/12/S15/S4 Abstract
"Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida)." ZooKeys 328 (2013). http://www.pensoft.net/journal_home_page.php?journal_id=1&page=article&SESID=bb44f46bc3cac09981bbfa99622b8aae&type=show&article_id=5763
